Chapter 14 Packages used in the book

The list of packages used when compiling this book is listed below. This can be very useful when reproducing the examples in this book as results may vary when different versions of R and installed packages are used.

## [1] "2021-08-29 15:49:34 UTC"
## R version 4.0.5 (2021-03-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Debian GNU/Linux 11 (bullseye)
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/
## attached base packages:
## [1] splines   parallel  stats     graphics  grDevices utils    
## [7] datasets  methods   base     
## other attached packages:
##  [1] viridis_0.6.1         viridisLite_0.4.0    
##  [3] USAboundaries_0.3.1   tmap_3.3-2           
##  [5] spelling_2.2          spatstat_2.2-0       
##  [7] spatstat.linnet_2.3-0 spatstat.core_2.3-0  
##  [9] rpart_4.1-15          spatstat.geom_2.2-2  
## [11] spatstat.data_2.1-0   smcure_2.0           
## [13] SemiPar_1.0-4.2       SDraw_2.1.13         
## [15] rmarkdown_2.9         rgeos_0.5-5          
## [17] rgdal_1.5-23          RColorBrewer_1.1-2   
## [19] mice_3.13.0           maptools_1.1-1       
## [21] MixtureInf_1.1        logitnorm_0.8.38     
## [23] lme4_1.1-27.1         leaflet_2.0.4.1      
## [25] knitr_1.33            KFAS_1.4.6           
## [27] JMbayes_0.8-85        rstan_2.21.2         
## [29] StanHeaders_2.21.0-7  doParallel_1.0.16    
## [31] iterators_1.0.13      survival_3.2-11      
## [33] nlme_3.1-152          inlabru_2.3.1        
## [35] INLABMA_0.1-11        INLA_21.02.23        
## [37] foreach_1.5.1         Matrix_1.3-4         
## [39] gridExtra_2.3         ggfortify_0.4.12     
## [41] ggplot2_3.3.5         faraway_1.0.7        
## [43] drc_3.0-1             dlm_1.1-5            
## [45] deldir_0.2-10         DClusterm_1.0-1      
## [47] DCluster_0.2-7        MASS_7.3-54          
## [49] spdep_1.1-8           sf_1.0-2             
## [51] spData_0.3.10         boot_1.3-28          
## [53] spacetime_1.2-5       sp_1.4-5             
## [55] bookdown_0.22        
## loaded via a namespace (and not attached):
##   [1] utf8_1.2.2              tidyselect_1.1.1       
##   [3] htmlwidgets_1.5.3       grid_4.0.5             
##   [5] munsell_0.5.0           codetools_0.2-18       
##   [7] units_0.7-2             withr_2.4.2            
##   [9] colorspace_2.0-2        AlgDesign_1.2.0        
##  [11] rstudioapi_0.13         stats4_4.0.5           
##  [13] tensor_1.5              polyclip_1.10-0        
##  [15] coda_0.19-4             LearnBayes_2.15.1      
##  [17] vctrs_0.3.8             generics_0.1.0         
##  [19] TH.data_1.0-10          xfun_0.24              
##  [21] R6_2.5.0                jagsUI_1.5.2           
##  [23] spatstat.utils_2.2-0    assertthat_0.2.1       
##  [25] scales_1.1.1            multcomp_1.4-17        
##  [27] nnet_7.3-16             gtable_0.3.0           
##  [29] lwgeom_0.2-7            processx_3.5.2         
##  [31] goftest_1.2-2           sandwich_3.0-1         
##  [33] rlang_0.4.11            dichromat_2.0-0        
##  [35] rjags_4-10              broom_0.7.9            
##  [37] checkmate_2.0.0         inline_0.3.19          
##  [39] yaml_2.2.1              abind_1.4-5            
##  [41] crosstalk_1.1.1         backports_1.2.1        
##  [43] spsurvey_4.1.4          Hmisc_4.5-0            
##  [45] tools_4.0.5             ellipsis_0.3.2         
##  [47] raster_3.4-13           jquerylib_0.1.4        
##  [49] proxy_0.4-26            Rcpp_1.0.7             
##  [51] base64enc_0.1-3         classInt_0.4-3         
##  [53] purrr_0.3.4             ps_1.6.0               
##  [55] prettyunits_1.1.1       tmaptools_3.1-1        
##  [57] zoo_1.8-9               haven_2.4.1            
##  [59] cluster_2.1.2           leafem_0.1.6           
##  [61] magrittr_2.0.1          data.table_1.14.0      
##  [63] openxlsx_4.2.4          gmodels_2.18.1         
##  [65] crossdes_1.1-1          mvtnorm_1.1-2          
##  [67] matrixStats_0.60.0      hms_1.1.0              
##  [69] evaluate_0.14           xtable_1.8-4           
##  [71] XML_3.99-0.6            rio_0.5.27             
##  [73] jpeg_0.1-9              readxl_1.3.1           
##  [75] compiler_4.0.5          tibble_3.1.3           
##  [77] KernSmooth_2.23-20      V8_3.4.2               
##  [79] crayon_1.4.1            minqa_1.2.4            
##  [81] htmltools_0.5.1.1       mgcv_1.8-36            
##  [83] Formula_1.2-4           tidyr_1.1.3            
##  [85] expm_0.999-6            RcppParallel_5.1.4     
##  [87] DBI_1.1.1               car_3.0-11             
##  [89] cli_3.0.1               quadprog_1.5-8         
##  [91] gdata_2.18.0            forcats_0.5.1          
##  [93] pkgconfig_2.0.3         foreign_0.8-81         
##  [95] spatstat.sparse_2.0-0   bslib_0.2.5.1          
##  [97] stringr_1.4.0           callr_3.7.0            
##  [99] digest_0.6.27           cellranger_1.1.0       
## [101] leafsync_0.1.0          intervals_0.15.2       
## [103] htmlTable_2.2.1         curl_4.3.2             
## [105] gtools_3.9.2            nloptr_1.2.2.2         
## [107] lifecycle_1.0.0         jsonlite_1.7.2         
## [109] carData_3.0-4           fansi_0.5.0            
## [111] pillar_1.6.2            lattice_0.20-44        
## [113] loo_2.4.1               plotrix_3.8-1          
## [115] pkgbuild_1.2.0          glue_1.4.2             
## [117] xts_0.12.1              zip_2.2.0              
## [119] leaflet.providers_1.9.0 png_0.1-7              
## [121] class_7.3-19            stringi_1.7.3          
## [123] sass_0.4.0              latticeExtra_0.6-29    
## [125] stars_0.5-3             dplyr_1.0.7            
## [127] e1071_1.7-8

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