Chapter 14 Packages used in the book
The list of packages used when compiling this book is listed below. This can be
very useful when reproducing the examples in this book as results may vary when
different versions of R and installed packages are used.
## [1] "2021-08-29 15:49:34 UTC"## R version 4.0.5 (2021-03-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Debian GNU/Linux 11 (bullseye)
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.13.so
##
## attached base packages:
## [1] splines parallel stats graphics grDevices utils
## [7] datasets methods base
##
## other attached packages:
## [1] viridis_0.6.1 viridisLite_0.4.0
## [3] USAboundaries_0.3.1 tmap_3.3-2
## [5] spelling_2.2 spatstat_2.2-0
## [7] spatstat.linnet_2.3-0 spatstat.core_2.3-0
## [9] rpart_4.1-15 spatstat.geom_2.2-2
## [11] spatstat.data_2.1-0 smcure_2.0
## [13] SemiPar_1.0-4.2 SDraw_2.1.13
## [15] rmarkdown_2.9 rgeos_0.5-5
## [17] rgdal_1.5-23 RColorBrewer_1.1-2
## [19] mice_3.13.0 maptools_1.1-1
## [21] MixtureInf_1.1 logitnorm_0.8.38
## [23] lme4_1.1-27.1 leaflet_2.0.4.1
## [25] knitr_1.33 KFAS_1.4.6
## [27] JMbayes_0.8-85 rstan_2.21.2
## [29] StanHeaders_2.21.0-7 doParallel_1.0.16
## [31] iterators_1.0.13 survival_3.2-11
## [33] nlme_3.1-152 inlabru_2.3.1
## [35] INLABMA_0.1-11 INLA_21.02.23
## [37] foreach_1.5.1 Matrix_1.3-4
## [39] gridExtra_2.3 ggfortify_0.4.12
## [41] ggplot2_3.3.5 faraway_1.0.7
## [43] drc_3.0-1 dlm_1.1-5
## [45] deldir_0.2-10 DClusterm_1.0-1
## [47] DCluster_0.2-7 MASS_7.3-54
## [49] spdep_1.1-8 sf_1.0-2
## [51] spData_0.3.10 boot_1.3-28
## [53] spacetime_1.2-5 sp_1.4-5
## [55] bookdown_0.22
##
## loaded via a namespace (and not attached):
## [1] utf8_1.2.2 tidyselect_1.1.1
## [3] htmlwidgets_1.5.3 grid_4.0.5
## [5] munsell_0.5.0 codetools_0.2-18
## [7] units_0.7-2 withr_2.4.2
## [9] colorspace_2.0-2 AlgDesign_1.2.0
## [11] rstudioapi_0.13 stats4_4.0.5
## [13] tensor_1.5 polyclip_1.10-0
## [15] coda_0.19-4 LearnBayes_2.15.1
## [17] vctrs_0.3.8 generics_0.1.0
## [19] TH.data_1.0-10 xfun_0.24
## [21] R6_2.5.0 jagsUI_1.5.2
## [23] spatstat.utils_2.2-0 assertthat_0.2.1
## [25] scales_1.1.1 multcomp_1.4-17
## [27] nnet_7.3-16 gtable_0.3.0
## [29] lwgeom_0.2-7 processx_3.5.2
## [31] goftest_1.2-2 sandwich_3.0-1
## [33] rlang_0.4.11 dichromat_2.0-0
## [35] rjags_4-10 broom_0.7.9
## [37] checkmate_2.0.0 inline_0.3.19
## [39] yaml_2.2.1 abind_1.4-5
## [41] crosstalk_1.1.1 backports_1.2.1
## [43] spsurvey_4.1.4 Hmisc_4.5-0
## [45] tools_4.0.5 ellipsis_0.3.2
## [47] raster_3.4-13 jquerylib_0.1.4
## [49] proxy_0.4-26 Rcpp_1.0.7
## [51] base64enc_0.1-3 classInt_0.4-3
## [53] purrr_0.3.4 ps_1.6.0
## [55] prettyunits_1.1.1 tmaptools_3.1-1
## [57] zoo_1.8-9 haven_2.4.1
## [59] cluster_2.1.2 leafem_0.1.6
## [61] magrittr_2.0.1 data.table_1.14.0
## [63] openxlsx_4.2.4 gmodels_2.18.1
## [65] crossdes_1.1-1 mvtnorm_1.1-2
## [67] matrixStats_0.60.0 hms_1.1.0
## [69] evaluate_0.14 xtable_1.8-4
## [71] XML_3.99-0.6 rio_0.5.27
## [73] jpeg_0.1-9 readxl_1.3.1
## [75] compiler_4.0.5 tibble_3.1.3
## [77] KernSmooth_2.23-20 V8_3.4.2
## [79] crayon_1.4.1 minqa_1.2.4
## [81] htmltools_0.5.1.1 mgcv_1.8-36
## [83] Formula_1.2-4 tidyr_1.1.3
## [85] expm_0.999-6 RcppParallel_5.1.4
## [87] DBI_1.1.1 car_3.0-11
## [89] cli_3.0.1 quadprog_1.5-8
## [91] gdata_2.18.0 forcats_0.5.1
## [93] pkgconfig_2.0.3 foreign_0.8-81
## [95] spatstat.sparse_2.0-0 bslib_0.2.5.1
## [97] stringr_1.4.0 callr_3.7.0
## [99] digest_0.6.27 cellranger_1.1.0
## [101] leafsync_0.1.0 intervals_0.15.2
## [103] htmlTable_2.2.1 curl_4.3.2
## [105] gtools_3.9.2 nloptr_1.2.2.2
## [107] lifecycle_1.0.0 jsonlite_1.7.2
## [109] carData_3.0-4 fansi_0.5.0
## [111] pillar_1.6.2 lattice_0.20-44
## [113] loo_2.4.1 plotrix_3.8-1
## [115] pkgbuild_1.2.0 glue_1.4.2
## [117] xts_0.12.1 zip_2.2.0
## [119] leaflet.providers_1.9.0 png_0.1-7
## [121] class_7.3-19 stringi_1.7.3
## [123] sass_0.4.0 latticeExtra_0.6-29
## [125] stars_0.5-3 dplyr_1.0.7
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